IL_11HV_115

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

11HV|1|28|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_115 not in the Motif Atlas

Homologous match to IL_8GLP_133

Geometric discrepancy: 0.0503

The information below is about IL_8GLP_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

11HV|1|28|U|3927
11HV|1|28|A|3928
11HV|1|28|G|3929
*
11HV|1|28|U|4181
11HV|1|28|G|4182
11HV|1|28|G|4183
11HV|1|28|G|4184

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 42

eL42

Chain L8

60S ribosomal protein L8