IL_11HV_116
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 11HV|1|28|G|4084, 11HV|1|28|G|4086, 11HV|1|28|G|4087, 11HV|1|28|C|4162, 11HV|1|28|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_116 not in the Motif Atlas
- Homologous match to IL_8GLP_135
- Geometric discrepancy: 0.0738
- The information below is about IL_8GLP_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.4
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
11HV|1|28|G|4082
11HV|1|28|U|4083
11HV|1|28|G|4084
11HV|1|28|A|4085
11HV|1|28|G|4086
11HV|1|28|G|4087
11HV|1|28|C|4088
*
11HV|1|28|G|4161
11HV|1|28|C|4162
11HV|1|28|U|4163
11HV|1|28|C|4164
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
- Chain cc
- Large ribosomal subunit protein uL23
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