IL_11HV_123
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_123 not in the Motif Atlas
- Homologous match to IL_9H3G_116
- Geometric discrepancy: 0.0986
- The information below is about IL_9H3G_116
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.10
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 43
Unit IDs
11HV|1|28|G|4400
11HV|1|28|G|4401
*
11HV|1|28|U|4442
11HV|1|28|C|4443
11HV|1|28|C|4444
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 29
- Large ribosomal subunit protein eL29
- Chain L3
- 60S ribosomal protein L3
Coloring options: