IL_11HV_131

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_131 not in the Motif Atlas

Geometric match to IL_8OI5_110

Geometric discrepancy: 0.0811

The information below is about IL_8OI5_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11HV|1|28|C|4466
11HV|1|28|A|4467
11HV|1|28|U|4468
*
11HV|1|28|G|4489
11HV|1|28|C|4490
11HV|1|28|G|4491

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 25

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3