IL_11HV_133

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

11HV|1|28|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_133 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.0873

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

11HV|1|28|U|4468
11HV|1|28|U|4469
11HV|1|28|G|4470
*
11HV|1|28|C|4485
11HV|1|28|C|4486
11HV|1|28|A|4487
11HV|1|28|A|4488
11HV|1|28|G|4489

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13