IL_11HV_152

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

11HV|1|28|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_152 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3301

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11HV|1|28|C|4996
11HV|1|28|G|4997
*
11HV|1|28|U|5053
11HV|1|28|C|5054
11HV|1|28|G|5055

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3