IL_11HV_153

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

11HV|1|28|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_153 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.1387

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

11HV|1|28|G|5000
11HV|1|28|U|5001
11HV|1|28|U|5002
*
11HV|1|28|G|5045
11HV|1|28|U|5046
11HV|1|28|C|5047
11HV|1|28|A|5048
11HV|1|28|G|5049
11HV|1|28|C|5050

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 24

Ribosomal protein L24

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3