IL_11IQ_017

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_017 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.3235

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.7

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

11IQ|1|18|C|317
11IQ|1|18|A|318
11IQ|1|18|C|319
11IQ|1|18|G|320
*
11IQ|1|18|C|331
11IQ|1|18|G|332
11IQ|1|18|G|333

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 24

Large ribosomal subunit protein eL24

Chain S6

40S ribosomal protein S6