IL_11IQ_019

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

11IQ|1|18|U|368, 11IQ|1|18|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_019 not in the Motif Atlas

Geometric match to IL_8GLP_211

Geometric discrepancy: 0.1609

The information below is about IL_8GLP_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

11IQ|1|18|U|366
11IQ|1|18|U|367
11IQ|1|18|U|368
11IQ|1|18|C|369
11IQ|1|18|G|370
11IQ|1|18|A|371
*
11IQ|1|18|U|393
11IQ|1|18|G|394

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain DD

Small ribosomal subunit protein uS17

Chain S8

40S ribosomal protein S8