IL_11IQ_029

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_029 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.1638

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

11IQ|1|18|U|566
11IQ|1|18|C|567
11IQ|1|18|C|568
11IQ|1|18|A|569
*
11IQ|1|18|U|581
11IQ|1|18|U|582
11IQ|1|18|A|583
11IQ|1|18|A|584

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S9

40S ribosomal protein S9

Chain SS

40S ribosomal protein S24