IL_11IQ_048

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_048 not in the Motif Atlas

Homologous match to IL_9PN5_190

Geometric discrepancy: 0.0991

The information below is about IL_9PN5_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11IQ|1|18|C|1047
11IQ|1|18|G|1048
11IQ|1|18|A|1049
11IQ|1|18|A|1050
11IQ|1|18|G|1051
*
11IQ|1|18|C|1067
11IQ|1|18|G|1068
11IQ|1|18|U|1069
11IQ|1|18|A|1070
11IQ|1|18|G|1071

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain GG

Small ribosomal subunit protein uS11

Chain L8

60S ribosomal protein L8

Chain UU

eS26