IL_11IQ_055

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_055 not in the Motif Atlas

Geometric match to IL_9PN5_069

Geometric discrepancy: 0.1819

The information below is about IL_9PN5_069

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

11IQ|1|18|G|1211
11IQ|1|18|G|1212
*
11IQ|1|18|C|1687
11IQ|1|18|C|1688
11IQ|1|18|C|1689

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S2

40S ribosomal protein S2

Chain UU

eS26