IL_11IQ_065

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

11IQ|1|18|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_065 not in the Motif Atlas

Geometric match to IL_9PN5_204

Geometric discrepancy: 0.1243

The information below is about IL_9PN5_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

11IQ|1|18|U|1329
11IQ|1|18|G|1330
11IQ|1|18|C|1331
11IQ|1|18|A|1332
11IQ|1|18|U|1333
*
11IQ|1|18|A|1498
11IQ|1|18|U|1499
11IQ|1|18|G|1500

Current chains

Chain 18

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S10

Chain OO

40S ribosomal protein S20

Chain RB

SERBP1

Chain S3

40S ribosomal protein S3

Chain XX

40S ribosomal protein S29

Chain v

Elongation factor 2