IL_11IQ_073

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_073 not in the Motif Atlas

Geometric match to IL_5MWI_003

Geometric discrepancy: 0.1223

The information below is about IL_5MWI_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11IQ|1|18|A|1537
11IQ|1|18|C|1538
11IQ|1|18|U|1539
*
11IQ|1|18|A|1594
11IQ|1|18|U|1595
11IQ|1|18|U|1596

Current chains

Chain 18

18S rRNA

Nearby chains

Chain II

Small ribosomal subunit protein uS9

Chain LL

40S ribosomal protein S18

Chain MM

Small ribosomal subunit protein eS19

Chain S5

Small ribosomal subunit protein uS7

Chain TT

40S ribosomal protein S25