IL_11IQ_097

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

11IQ|1|28|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_097 not in the Motif Atlas

Geometric match to IL_8GLP_007

Geometric discrepancy: 0.0718

The information below is about IL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

11IQ|1|28|C|118
11IQ|1|28|G|119
11IQ|1|28|A|120
11IQ|1|28|A|121
*
11IQ|1|28|U|152
11IQ|1|28|G|153

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 35

60S ribosomal protein L35

Chain aa

Large ribosomal subunit protein eL8