IL_11IQ_111

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_111 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.1964

The information below is about IL_8B0X_103

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

11IQ|1|28|G|461
11IQ|1|28|G|462
11IQ|1|28|A|463
11IQ|1|28|G|464
*
11IQ|1|28|C|691
11IQ|1|28|A|692
11IQ|1|28|C|693
11IQ|1|28|C|694

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L6

Chain gg

60S ribosomal protein L28