IL_11IQ_136

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_136 not in the Motif Atlas

Homologous match to IL_8GLP_289

Geometric discrepancy: 0.0792

The information below is about IL_8GLP_289

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11IQ|1|28|C|1520
11IQ|1|28|C|1521
11IQ|1|28|G|1522
*
11IQ|1|28|C|1655
11IQ|1|28|U|1656
11IQ|1|28|G|1657

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain dd

60S ribosomal protein L27a