IL_11IQ_159

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

11IQ|1|28|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_159 not in the Motif Atlas

Homologous match to IL_8GLP_078

Geometric discrepancy: 0.0786

The information below is about IL_8GLP_078

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11IQ|1|28|C|1920
11IQ|1|28|C|1921
11IQ|1|28|G|1922
*
11IQ|1|28|C|2062
11IQ|1|28|G|2063

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20

Chain L7

60S ribosomal protein L7

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33