IL_11IQ_161

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

11IQ|1|28|C|1935, 11IQ|1|28|A|2041, 11IQ|1|28|U|2044, 11IQ|1|28|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_161 not in the Motif Atlas

Homologous match to IL_8GLP_080

Geometric discrepancy: 0.072

The information below is about IL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

11IQ|1|28|G|1933
11IQ|1|28|A|1934
11IQ|1|28|C|1935
11IQ|1|28|C|1936
11IQ|1|28|C|1937
11IQ|1|28|C|1938
11IQ|1|28|A|1939
11IQ|1|28|G|1940
11IQ|1|28|A|1941
11IQ|1|28|A|1942
11IQ|1|28|A|1943
11IQ|1|28|A|1944
*
11IQ|1|28|U|2038
11IQ|1|28|G|2039
11IQ|1|28|A|2040
11IQ|1|28|A|2041
11IQ|1|28|A|2042
11IQ|1|28|A|2043
11IQ|1|28|U|2044
11IQ|1|28|G|2045
11IQ|1|28|G|2046
11IQ|1|28|A|2047
11IQ|1|28|U|2048
11IQ|1|28|G|2049
11IQ|1|28|G|2050
11IQ|1|28|C|2051
11IQ|1|28|G|2052
11IQ|1|28|C|2053

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 40

Large ribosomal subunit protein eL40

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33