IL_11IQ_165

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

11IQ|1|28|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_165 not in the Motif Atlas

Geometric match to IL_1MMS_004

Geometric discrepancy: 0.1437

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

11IQ|1|28|G|2001
11IQ|1|28|A|2002
11IQ|1|28|G|2003
11IQ|1|28|U|2004
11IQ|1|28|G|2005
*
11IQ|1|28|C|2014
11IQ|1|28|U|2015
11IQ|1|28|C|2016

Current chains

Chain 28

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11