IL_11IQ_172

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

11IQ|1|28|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_172 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.123

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

11IQ|1|28|U|2415
11IQ|1|28|G|2416
11IQ|1|28|A|2417
11IQ|1|28|A|2418
11IQ|1|28|C|2419
*
11IQ|1|28|G|2427
11IQ|1|28|A|2428
11IQ|1|28|A|2429

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

Large ribosomal subunit protein uL22

Chain 19

60S ribosomal protein L19

Chain 39

60S ribosomal protein L39