IL_11IQ_194

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

11IQ|1|28|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_194 not in the Motif Atlas

Homologous match to IL_9AXU_080

Geometric discrepancy: 0.0605

The information below is about IL_9AXU_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

11IQ|1|28|C|3700
11IQ|1|28|C|3701
11IQ|1|28|A|3702
11IQ|1|28|G|3703
*
11IQ|1|28|C|3749
11IQ|1|28|G|3750

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain B

Eukaryotic translation initiation factor 5A-1

Chain L8

60S ribosomal protein L8