IL_11IQ_206

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_206 not in the Motif Atlas

Geometric match to IL_9DFE_005

Geometric discrepancy: 0.2259

The information below is about IL_9DFE_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

11IQ|1|28|G|4095
11IQ|1|28|C|4096
11IQ|1|28|G|4097
*
11IQ|1|28|C|4112
11IQ|1|28|U|4113

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain AS

40S ribosomal protein S3a

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8