IL_11IQ_212

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_212 not in the Motif Atlas

Homologous match to IL_9PN5_098

Geometric discrepancy: 0.1348

The information below is about IL_9PN5_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60246.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

11IQ|1|28|G|4400
11IQ|1|28|G|4401
11IQ|1|28|C|4402
11IQ|1|28|U|4403
*
11IQ|1|28|G|4440
11IQ|1|28|A|4441
11IQ|1|28|U|4442
11IQ|1|28|C|4443
11IQ|1|28|C|4444

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 29

Large ribosomal subunit protein eL29

Chain L3

60S ribosomal protein L3