IL_11IQ_215

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_215 not in the Motif Atlas

Homologous match to IL_9PN5_101

Geometric discrepancy: 0.0734

The information below is about IL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11IQ|1|28|C|4412
11IQ|1|28|C|4413
11IQ|1|28|A|4414
11IQ|1|28|A|4415
11IQ|1|28|G|4416
*
11IQ|1|28|C|4426
11IQ|1|28|G|4427
11IQ|1|28|A|4428
11IQ|1|28|C|4429
11IQ|1|28|G|4430

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 40

Large ribosomal subunit protein eL40