IL_11IQ_221

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

11IQ|1|28|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_221 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.0663

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

11IQ|1|28|U|4468
11IQ|1|28|U|4469
11IQ|1|28|G|4470
*
11IQ|1|28|C|4485
11IQ|1|28|C|4486
11IQ|1|28|A|4487
11IQ|1|28|A|4488
11IQ|1|28|G|4489

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13