IL_11IQ_241

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

11IQ|1|28|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_241 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.1393

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

11IQ|1|28|G|5000
11IQ|1|28|U|5001
11IQ|1|28|U|5002
*
11IQ|1|28|G|5045
11IQ|1|28|U|5046
11IQ|1|28|C|5047
11IQ|1|28|A|5048
11IQ|1|28|G|5049
11IQ|1|28|C|5050

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 24

Large ribosomal subunit protein eL24

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3