IL_11IQ_245

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

11IQ|1|5|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_245 not in the Motif Atlas

Homologous match to IL_8QYX_165

Geometric discrepancy: 0.0846

The information below is about IL_8QYX_165

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11IQ|1|5|C|15
11IQ|1|5|A|16
*
11IQ|1|5|U|62
11IQ|1|5|C|63
11IQ|1|5|G|64

Current chains

Chain 5

5S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 11

60S ribosomal protein L11

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain L5

60S ribosomal protein L5