IL_11JJ_003

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

11JJ|1|18|A|45, 11JJ|1|18|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_003 not in the Motif Atlas

Homologous match to IL_9PN5_145

Geometric discrepancy: 0.1422

The information below is about IL_9PN5_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.4

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

11JJ|1|18|G|41
11JJ|1|18|A|42
11JJ|1|18|U|43
11JJ|1|18|U|44
11JJ|1|18|A|45
11JJ|1|18|A|46
11JJ|1|18|G|47
*
11JJ|1|18|C|479
11JJ|1|18|G|480
11JJ|1|18|C|481

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain v

Elongation factor 2