IL_11JJ_005
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_005 not in the Motif Atlas
- Homologous match to IL_9H3G_160
- Geometric discrepancy: 0.1526
- The information below is about IL_9H3G_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.8
- Basepair signature
- cWW-cWH-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|18|U|57
11JJ|1|18|C|58
11JJ|1|18|U|59
11JJ|1|18|A|60
11JJ|1|18|A|61
11JJ|1|18|G|62
*
11JJ|1|18|C|86
11JJ|1|18|U|87
11JJ|1|18|G|88
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
- Chain SS
- 40S ribosomal protein S24
Coloring options: