IL_11JJ_006
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 11JJ|1|18|C|65, 11JJ|1|18|C|67
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_006 not in the Motif Atlas
- Homologous match to IL_9PN5_148
- Geometric discrepancy: 0.289
- The information below is about IL_9PN5_148
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.4
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|18|U|63
11JJ|1|18|A|64
11JJ|1|18|C|65
11JJ|1|18|G|66
11JJ|1|18|C|67
11JJ|1|18|A|68
*
11JJ|1|18|U|81
11JJ|1|18|G|82
11JJ|1|18|A|83
11JJ|1|18|A|84
11JJ|1|18|A|85
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S6
- 40S ribosomal protein S6
- Chain SS
- 40S ribosomal protein S24
- Chain W
- Ribosomal protein L24
Coloring options: