IL_11JJ_009

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

11JJ|1|18|G|113, 11JJ|1|18|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_009 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.1781

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

11JJ|1|18|U|112
11JJ|1|18|G|113
11JJ|1|18|G|114
11JJ|1|18|U|115
*
11JJ|1|18|A|348
11JJ|1|18|A|349

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8