IL_11JJ_017

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_017 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.245

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.7

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

11JJ|1|18|C|317
11JJ|1|18|A|318
11JJ|1|18|C|319
11JJ|1|18|G|320
*
11JJ|1|18|C|331
11JJ|1|18|G|332
11JJ|1|18|G|333

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S6

40S ribosomal protein S6

Chain W

Ribosomal protein L24