IL_11JJ_020

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

11JJ|1|18|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_020 not in the Motif Atlas

Homologous match to IL_9H3G_175

Geometric discrepancy: 0.1995

The information below is about IL_9H3G_175

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

11JJ|1|18|G|411
11JJ|1|18|G|412
11JJ|1|18|G|413
*
11JJ|1|18|C|424
11JJ|1|18|G|425
11JJ|1|18|A|426
11JJ|1|18|U|427
11JJ|1|18|U|428
11JJ|1|18|C|429

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9