IL_11JJ_025

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

11JJ|1|18|U|607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|18|A|599
11JJ|1|18|G|600
11JJ|1|18|G|601
11JJ|1|18|G|602
11JJ|1|18|C|603
11JJ|1|18|A|604
11JJ|1|18|A|605
11JJ|1|18|G|606
11JJ|1|18|U|607
11JJ|1|18|C|608
*
11JJ|1|18|G|635
11JJ|1|18|C|636
11JJ|1|18|U|637

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

LARP1

Chain S2

40S ribosomal protein S2

Chain S3

Small ribosomal subunit protein uS3

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30