IL_11JJ_030

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_030 not in the Motif Atlas

Homologous match to IL_9H3G_191

Geometric discrepancy: 0.1143

The information below is about IL_9H3G_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11JJ|1|18|C|676
11JJ|1|18|G|677
11JJ|1|18|U|678
11JJ|1|18|A|679
11JJ|1|18|G|680
*
11JJ|1|18|U|1025
11JJ|1|18|C|1026
11JJ|1|18|A|1027
11JJ|1|18|A|1028
11JJ|1|18|G|1029

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain RR

40S ribosomal protein S23

Chain WX

40S ribosomal protein S15a