IL_11JJ_034
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_034 not in the Motif Atlas
- Homologous match to IL_9H3G_192
- Geometric discrepancy: 0.1441
- The information below is about IL_9H3G_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.4
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 25
Unit IDs
11JJ|1|18|A|802
11JJ|1|18|C|803
*
11JJ|1|18|G|860
11JJ|1|18|A|861
11JJ|1|18|A|862
11JJ|1|18|U|863
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS17
- Chain RR
- 40S ribosomal protein S23
- Chain S7
- Small ribosomal subunit protein eS7
- Chain WX
- 40S ribosomal protein S15a
Coloring options: