IL_11JJ_039
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_039 not in the Motif Atlas
- Geometric match to IL_8GLP_235
- Geometric discrepancy: 0.0848
- The information below is about IL_8GLP_235
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.5
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 37
Unit IDs
11JJ|1|18|A|922
11JJ|1|18|G|923
*
11JJ|1|18|C|1019
11JJ|1|18|A|1020
11JJ|1|18|U|1021
11JJ|1|18|U|1022
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain FF
- 40S ribosomal protein S13
- Chain VV
- 40S ribosomal protein S27
- Chain WX
- 40S ribosomal protein S15a
Coloring options: