IL_11JJ_040

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

11JJ|1|18|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_040 not in the Motif Atlas

Homologous match to IL_9H3G_198

Geometric discrepancy: 0.1158

The information below is about IL_9H3G_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11JJ|1|18|G|925
11JJ|1|18|A|926
11JJ|1|18|C|927
*
11JJ|1|18|G|1014
11JJ|1|18|U|1015
11JJ|1|18|U|1016
11JJ|1|18|U|1017

Current chains

Chain 18

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S13

Chain VV

40S ribosomal protein S27