IL_11JJ_042
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 11JJ|1|18|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_042 not in the Motif Atlas
- Homologous match to IL_9PN5_185
- Geometric discrepancy: 0.1844
- The information below is about IL_9PN5_185
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
11JJ|1|18|C|931
11JJ|1|18|G|932
11JJ|1|18|G|933
11JJ|1|18|G|934
11JJ|1|18|G|935
*
11JJ|1|18|C|1007
11JJ|1|18|A|1008
11JJ|1|18|A|1009
11JJ|1|18|G|1010
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 30
- 60S ribosomal protein L30
- Chain AS
- 40S ribosomal protein S3a
- Chain FF
- 40S ribosomal protein S13
- Chain UU
- eS26
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