IL_11JJ_045
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_045 not in the Motif Atlas
- Homologous match to IL_9PN5_189
- Geometric discrepancy: 0.1238
- The information below is about IL_9PN5_189
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|18|A|1042
11JJ|1|18|G|1043
11JJ|1|18|G|1044
11JJ|1|18|U|1045
11JJ|1|18|U|1046
11JJ|1|18|C|1047
*
11JJ|1|18|G|1071
11JJ|1|18|U|1072
11JJ|1|18|U|1073
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain GG
- Small ribosomal subunit protein uS11
- Chain L8
- 60S ribosomal protein L8
- Chain UU
- eS26
- Chain ff
- 60S ribosomal protein L37a
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