IL_11JJ_058

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

11JJ|1|18|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_058 not in the Motif Atlas

Homologous match to IL_9H3G_218

Geometric discrepancy: 0.1103

The information below is about IL_9H3G_218

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

11JJ|1|18|G|1325
11JJ|1|18|U|1326
11JJ|1|18|G|1327
*
11JJ|1|18|C|1502
11JJ|1|18|C|1503

Current chains

Chain 18

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S10

Chain XX

40S ribosomal protein S29

Chain v

Elongation factor 2