IL_11JJ_059
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 11JJ|1|18|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_059 not in the Motif Atlas
- Geometric match to IL_9PN5_204
- Geometric discrepancy: 0.1306
- The information below is about IL_9PN5_204
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
11JJ|1|18|U|1329
11JJ|1|18|G|1330
11JJ|1|18|C|1331
11JJ|1|18|A|1332
11JJ|1|18|U|1333
*
11JJ|1|18|A|1498
11JJ|1|18|U|1499
11JJ|1|18|G|1500
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain LA
- LARP1
- Chain OO
- 40S ribosomal protein S20
- Chain S3
- Small ribosomal subunit protein uS3
- Chain XX
- 40S ribosomal protein S29
- Chain v
- Elongation factor 2
Coloring options: