IL_11JJ_090

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

11JJ|1|28|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_090 not in the Motif Atlas

Geometric match to IL_8GLP_007

Geometric discrepancy: 0.102

The information below is about IL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

11JJ|1|28|C|118
11JJ|1|28|G|119
11JJ|1|28|A|120
11JJ|1|28|A|121
*
11JJ|1|28|U|152
11JJ|1|28|G|153

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 35

60S ribosomal protein L35

Chain aa

Large ribosomal subunit protein eL8