IL_11JJ_106

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

11JJ|1|28|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|A|466
11JJ|1|28|U|467
11JJ|1|28|U|468
11JJ|1|28|C|469
11JJ|1|28|A|470
11JJ|1|28|A|471
11JJ|1|28|C|472
*
11JJ|1|28|G|682
11JJ|1|28|C|683
11JJ|1|28|G|684
11JJ|1|28|C|685
11JJ|1|28|A|686
11JJ|1|28|U|687
11JJ|1|28|U|688
11JJ|1|28|U|689

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L6

Chain gg

60S ribosomal protein L28