IL_11JJ_111

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

11JJ|1|28|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_111 not in the Motif Atlas

Geometric match to IL_9H3G_155

Geometric discrepancy: 0.358

The information below is about IL_9H3G_155

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11JJ|1|28|G|497
11JJ|1|28|C|498
11JJ|1|28|G|499
*
11JJ|1|28|C|656
11JJ|1|28|C|657

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4