IL_11JJ_119

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

11JJ|1|28|C|738, 11JJ|1|28|C|738|||A, 11JJ|1|28|C|924, 11JJ|1|28|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_119 not in the Motif Atlas

Geometric match to IL_8B0X_156

Geometric discrepancy: 0.2873

The information below is about IL_8B0X_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

11JJ|1|28|C|737
11JJ|1|28|C|738
11JJ|1|28|C|738|||A
11JJ|1|28|G|739
*
11JJ|1|28|C|923
11JJ|1|28|C|924
11JJ|1|28|C|925
11JJ|1|28|G|926

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14