IL_11JJ_121

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_121 not in the Motif Atlas

Geometric match to IL_9PN5_229

Geometric discrepancy: 0.1855

The information below is about IL_9PN5_229

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11JJ|1|28|G|1074
11JJ|1|28|G|1075
11JJ|1|28|C|1076
*
11JJ|1|28|G|1234
11JJ|1|28|G|1235
11JJ|1|28|C|1236

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain L6

60S ribosomal protein L6

Chain L7

60S ribosomal protein L7