IL_11JJ_129

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

11JJ|1|28|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_129 not in the Motif Atlas

Homologous match to IL_8GLP_050

Geometric discrepancy: 0.1977

The information below is about IL_8GLP_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73464.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

11JJ|1|28|G|1360
11JJ|1|28|G|1361
*
11JJ|1|28|C|1376
11JJ|1|28|G|1377
11JJ|1|28|C|1378
11JJ|1|28|C|1379

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 15

60S ribosomal protein L15

Chain L4

60S ribosomal protein L4