IL_11JJ_146
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 11JJ|1|28|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_146 not in the Motif Atlas
- Homologous match to IL_9H3G_046
- Geometric discrepancy: 0.1115
- The information below is about IL_9H3G_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.3
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
11JJ|1|28|G|1739
11JJ|1|28|C|1740
11JJ|1|28|G|1741
11JJ|1|28|A|1742
11JJ|1|28|A|1743
11JJ|1|28|U|1744
*
11JJ|1|28|A|1786
11JJ|1|28|A|1787
11JJ|1|28|A|1788
11JJ|1|28|C|1789
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 21
- 60S ribosomal protein L21
- Chain 6
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
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